PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07767_BGI-A2_v1.0
Common NameF383_07150
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 685aa    MW: 75477.5 Da    PI: 9.6298
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07767_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.7e-111044136
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                                ++ W t+E++ll++av+++G+++W+++a +++ +Rt
  Cotton_A_07767_BGI-A2_v1.0 10 KQTWGTWEELLLACAVHRHGSNSWDSVAMELQ-KRT 44
                                789*****************************.999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.6E-7967IPR001005SANT/Myb domain
SuperFamilySSF466894.04E-5967IPR009057Homeodomain-like
PfamPF002494.6E-101045IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-41060IPR009057Homeodomain-like
CDDcd001671.93E-61265No hitNo description
SMARTSM002971.2E-14299408IPR001487Bromodomain
SuperFamilySSF473701.31E-15301405IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.5E-13306403IPR001487Bromodomain
CDDcd043691.17E-13310403No hitNo description
PfamPF004392.7E-10314392IPR001487Bromodomain
PROSITE profilePS5001413.851318389IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MAKPHNFPEK QTWGTWEELL LACAVHRHGS NSWDSVAMEL QKRTSTFQHL FFTPLSCQQK  60
FQDLKRRFAE NGDDDETTNN ISTSAVPWLD ELRKLRVAEL RREVQQYDLS IVSLQLKVQK  120
LKEEREQSLT ENGKETEKSD LEREKGSEKK EENETENITR RPVNSREESE RENRSVNESN  180
STDPKEEDPG TGPDEAKDEL EPVEPDGGET GKEVQSVKPE GEASCNGSCD SVAKGSAENS  240
KRVDPRETGD SPESVAESKG EEPNRESSDV QSSASLSGKE KKNAEPGEPD NGELDQSPSI  300
KKVSVESQPL VEFLEIFQSH KLGSLFERRL ESQKTPDYSN LIRQHLDLET IGMRVEEGWY  360
SGCKSKFFRD LLLLLTNAII FFGKESSEYA AAIEFRQLVS KEIGAQFRNS SVLPKEQSPS  420
RVPESQMPLK PEPQLSLSLS MKPKLSVPLI ACRKRSSIAA KSSTSSSGQE KKRQLLASLM  480
NEKPALGWKQ HDKSTEESPV AKKRTRESPA SGSRKASKNA KARSNTNTNK NSGTNANAAI  540
SSKGGSSNDN LESKGGEKEK NNSKTASSKK PSAANFLNRM RSSLSGNEPL TETLKGVISS  600
DKGKGGGDAG EHKKNSTSSK GDQQKDRTPT PRTRSGGKRT SPAKRSTGRP PKRVPATQSA  660
PPGKRGREAV ENHSGGGQAK KRSRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5802542e-92JX580254.1 Gossypium hirsutum clone NBRI_GE12650 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611313.10.0PREDICTED: muscle M-line assembly protein unc-89-like
TrEMBLA0A2P5X1200.0A0A2P5X120_GOSBA; Uncharacterized protein
STRINGGorai.006G142400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-103DNA-binding bromodomain-containing protein