PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07810_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 692aa    MW: 76698.9 Da    PI: 4.7143
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07810_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-07632683346
                                 SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqk 46 
                                 +WT +E+e l ++v++l ++     Wk+I +         Rt+ ++k++w++
  Cotton_A_07810_BGI-A2_v1.0 632 PWTNDEEEMLRKGVQELANEdgtvPWKRILEFGTnvflMDRTATDLKNKWRS 683
                                 8****************************98766899989**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.9E-8414480IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579036.87E-8419480IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002493.8E-4431476IPR001965Zinc finger, PHD-type
PROSITE patternPS013590432475IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.956625685IPR017877Myb-like domain
SuperFamilySSF466898.58E-9627686IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-12629686IPR009057Homeodomain-like
CDDcd116604.94E-9632686No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MFRPYSYGPR AAWLWIIEYV SSFPQLDISI ISGLIETAPI LPEDLEENTS ERVALRCLEE  60
LFGPQNSHGS VAPVSRAVLN PSASCDDVLD HILYHILQKV PLSDLKNAGP ELLRWDGHSF  120
IEHKRATLPK CALEQLKDVI LLDDPYLDGN ENGPPSRSDD SNDENGNQEG NLIPQIKKNE  180
ELLGRNPIPS KRSRDELVAG NSKGIVSVNH GSMQCDLHLN AKKSKLVAKP ACTIQAVAEL  240
PIHLHDDDER LEDESQRIMK VTEIGTNNLG KVSQIGEGNR DLCVASRTPG LIDAVGRVEL  300
LDNQMENVQN DNTDMMVEQK HGDIICPNVV INESSPVENG APVKESSGDV GGNIDHDFTS  360
SSQNSISADG LQENVDLNGE KADMDHPCVE QICEDEDEIF NISLKKNLFL SSQHMASQDP  420
VQNADWTEQN SCVKCNQNGR LLVCTSSGCL LAVHESCLNC PARFDDKGHF LCPFCACSVS  480
ISNYLEAKNK IILARKKLVA FMGLMGKLIQ EQGRSWNHSK LNGNENLAGI QESGHLGREH  540
EHKQEELPAK LKTSDDNPTT ENTETFPINQ VEVEGDDILK EVVGPQITDA SQKLVNSDGE  600
ESSTSADDKY IISSHSTRSF SPTRRLRRKK APWTNDEEEM LRKGVQELAN EDGTVPWKRI  660
LEFGTNVFLM DRTATDLKNK WRSMCKDSPG CK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147665e-53JX614766.1 Gossypium hirsutum clone NBRI_GE58398 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611839.10.0PREDICTED: uncharacterized protein LOC108457340
RefseqXP_017611840.10.0PREDICTED: uncharacterized protein LOC108457340
TrEMBLA0A1U8HZX30.0A0A1U8HZX3_GOSHI; uncharacterized protein LOC107889543 isoform X2
STRINGGorai.006G138200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1434755