PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07818_BGI-A2_v1.0
Common NameF383_19536
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 297aa    MW: 32523 Da    PI: 8.3326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07818_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05269291223
                                 EETTTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                 +Cp+C+k F+++  L+ H  + H
  Cotton_A_07818_BGI-A2_v1.0 269 VCPKCSKGFRDPVALVEHVERdH 291
                                 7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.73E-12650No hitNo description
PROSITE profilePS510397.6931056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.1E-101153IPR000058Zinc finger, AN1-type
SMARTSM001540.00311352IPR000058Zinc finger, AN1-type
PfamPF014283.4E-131351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.0E-1091145IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.0E-893142No hitNo description
PROSITE profilePS510397.91398145IPR000058Zinc finger, AN1-type
SMARTSM001540.034101142IPR000058Zinc finger, AN1-type
PfamPF014281.7E-8101141IPR000058Zinc finger, AN1-type
SMARTSM003550.067231254IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785231259IPR007087Zinc finger, C2H2
PfamPF138949.1E-4232254No hitNo description
PROSITE patternPS000280233254IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-4235254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.4268291IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85268296IPR007087Zinc finger, C2H2
PROSITE patternPS000280270291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGTPQFPDLG KHCSVEDCKQ IDFLPFTCDR CHLVYCLEHR SYIKHHCPKA DKKDVTVVIC  60
PLCAKGVRLI PDEDPNITWE MHVNTECDPS NYDKVTKKKK CPVPGCREVL TFSNTIKCRD  120
CTLDHCLKHR FGPDHKCPGP KKSDPGFPFM GLLSRSRKES KNNQAPATSS SKWATSFLNA  180
ASTVRASAEA GMTKLGSEIS QKLQIARDGV GLSSSSGSGS GSSNGNAGQV EECPQCGAKF  240
ASVTTLVDHV EKVHERNNQS RVFKMSIDVC PKCSKGFRDP VALVEHVERD HGGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608551.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-134SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A0B0MKJ80.0A0A0B0MKJ8_GOSAR; Zinc finger AN1 and C2H2 domain-containing stress-associated 11-like protein
STRINGGorai.006G137400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-135C2H2 family protein