PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07903_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 198aa    MW: 21367.8 Da    PI: 6.4982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07903_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000434365123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                y+C+ C + F++   L  H+++H
  Cotton_A_07903_BGI-A2_v1.0 43 YTCSFCAREFRSAQALGGHMNVH 65
                                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.51E-64069No hitNo description
PfamPF139121.1E-54366IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.4064370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MPASCMWNPK AQPQAADDDS WEVRAFAEDI GNVLGTTWPP RSYTCSFCAR EFRSAQALGG  60
HMNVHRRDRA GLHQTYPATD AFRDPATSSI LSATAISSST LLIPTQHFPQ NAGFCLLHHH  120
DGVPASQPMN ACSIDSPSTL VSISPYPPPV MPPRFSNSSS LYYSNLNGGS NAGGINFRET  180
SIGELDLELR LGHPPPTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-133865229superman protein
2l1o_A3e-133865229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5858977e-80JX585897.1 Gossypium hirsutum clone NBRI_GE19581 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635718.11e-145PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A2P5WKR01e-143A0A2P5WKR0_GOSBA; Uncharacterized protein
STRINGGorai.008G226800.11e-111(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.19e-31C2H2 family protein