PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08040_BGI-A2_v1.0
Common NameF383_08629
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 307aa    MW: 33356.1 Da    PI: 5.0811
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08040_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.56.2e-56501541102
                       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdia 80 
                                 ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+dia
  Cotton_A_08040_BGI-A2_v1.0  50 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 132
                                 89*****998899********************************************************************** PP

                       NF-YC  81 aavtrtdifdflvdivprdelk 102
                                 aa+trtdifdflvdivprde+k
  Cotton_A_08040_BGI-A2_v1.0 133 AAITRTDIFDFLVDIVPRDEIK 154
                                 *******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.87E-3424144IPR009072Histone-fold
PfamPF008082.6E-2072135IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.2E-3673150IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDDNKQAQSS SYPPQPPTTS ITPPPPSSSA AIAATPPAPF HHLLQQQQQQ LQMFWSYQRQ  60
EIEQVNDFKN HQLPLARIKK IMKADEDVRM ISAEAPILFA KACELFILEL TIRSWLHAEE  120
NKRRTLQKND IAAAITRTDI FDFLVDIVPR DEIKDEAGLG GMVGTTASGV PYFYPPMGQP  180
AGAPAGPGGM MIGRPAVDPT GGIYAQPPSQ AWQSVWQTAG ADDGSYASGG SGGQGNLDGQ  240
GCYVSLAKNW LLTSVFLLDG YSMKILFGGL KLLTAKQFIG PIWLLDGMAN GVMHWGNPLE  300
ILVAYDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5458150395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634956.11e-177PREDICTED: nuclear transcription factor Y subunit C-1
SwissprotQ9FMV51e-113NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0B0PCL60.0A0A0B0PCL6_GOSAR; Nuclear transcription factor Y subunit C-4-like protein
STRINGGorai.008G206700.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.28e-88nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Qi M, et al.
    QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
    Plant Biotechnol. J., 2019. 17(1): p. 252-263
    [PMID:29878511]