PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08370_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 234aa MW: 27224.5 Da PI: 9.6641

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08370_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.2	2.5e-07	83	131	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ +h + Er RR++ +++++ L ++lP +K++K +i++ A+ +++L Cotton_A_08370_BGI-A2_v1.0 83 RCLKHMMKERIRREKQKKCYFALYSMLPLG-----TKNDKNSIVQTATMRVREL 131 577899***********************6.....6777777777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.04E-10	77	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.42E-5	80	125	No hit	No description
PROSITE profile	PS50888	11.896	82	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-5	83	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-7	86	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MDELIKLLLG EHGTIWYETT PVLQPVRPSA FQPYPKTPRT EPWLEADGCN NGVRSGNINK 60 RLIEFLRKTN WVSVISKDEK KQRCLKHMMK ERIRREKQKK CYFALYSMLP LGTKNDKNSI 120 VQTATMRVRE LEMEREELQR NNNELLVNLG GNANNEGAKI RARIDDPSYE IDYMLAVLKC 180 LKTLDSKPGM IRTTVYNQEL VLDLATKMKA ADVENAINRT LQEVERKLEE RRSI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016729099.1	1e-171	PREDICTED: transcription factor bHLH92-like
TrEMBL	A0A1U8MU57	1e-170	A0A1U8MU57_GOSHI; transcription factor bHLH92-like
STRING	Gorai.005G046700.1	1e-151	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24448	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	6e-23	bHLH family protein