PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08531_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 626aa    MW: 68987.6 Da    PI: 6.3444
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08531_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-09558606348
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                 +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Cotton_A_08531_BGI-A2_v1.0 558 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 606
                                 7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.926551610IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-13553613IPR009057Homeodomain-like
SMARTSM007178.3E-10555608IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-16557616IPR009057Homeodomain-like
CDDcd116601.00E-19557607No hitNo description
PfamPF002494.0E-7558606IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MEKVVEVEGS DEGKFEETGL ETSNFVLSSP KNVTDPVVYK LVRVDGNGRL VPATDDELME  60
VEGLLENEKR ETHIVADTGQ ALGCNSNEVS PSGMPQLESS EGLSQSENTE ADTEKLSAYL  120
ECLVSVFSLE DHFVKALFFT LSRENMLCLA CLPPDNSSAY VNVDSHCSEL HNKLPSIDEK  180
LQSQIPLQET VPSGAKSSSD DHVTQSRRVG VCLKPLDGPL EGGSSTSTGC ISSKPDFSKL  240
KGEICLDNLS IKELHEVFKA TFGRDTTVKD KLWLKRRIAM GLTNSCDVST TTFVIKDNKL  300
VKKDNEDGFN NVNLGAGKEH LAVAVEYNED LLNNLSSQID EHQTTSEVRL GNNVVENNFA  360
SEDLAADQRA AKRVRKPTKR YIEELSEAES KEYSGRSIAS TKNIGFRPLP SKAHARPARN  420
VSLEGRTVIT RLDSLGGFGI QVPCVYRIRR SRPRKNVTAL LKFHPSGMGM TATFIKKGFD  480
VHGSQMDNGS MNKVLEAKST PEQAPEQFVA ESKKETTPTD MGQNMGLKYV DPSGDTSDDN  540
VVTVPTAKGG IRRKHHRAWT LSEVMKLVEG VSKYGAGRWS EIKRLAFASY SYRTSVDLKD  600
KWRNLLKASF AQTPTDKGVR DIISFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1448454RRSRPRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017978819.10.0PREDICTED: uncharacterized protein LOC18596205 isoform X1
TrEMBLA0A2P5SKS40.0A0A2P5SKS4_GOSBA; Uncharacterized protein
STRINGEOY272220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-122TRF-like 6