PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08557_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20657.4 Da    PI: 9.0351
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08557_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.43.4e-223074448
                                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                                e +s+rqvtfskRr+g++KKA+ELS+LC+a+v v+ +s++g++y+
  Cotton_A_08557_BGI-A2_v1.0 30 EVESKRQVTFSKRRQGLFKKAKELSTLCGADVGVLTISKSGRVYT 74
                                6689***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.2781979IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-251978IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-211977IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-182141IPR002100Transcription factor, MADS-box
PfamPF003192.5E-223074IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-184156IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-185677IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEDVAMPITT EAKRARSSRG RQRIEIKKLE VESKRQVTFS KRRQGLFKKA KELSTLCGAD  60
VGVLTISKSG RVYTTDDVDI VLDRRLAESS SSHGNDSVRR QNEIVERRTN AGFGLDELIE  120
NLAVEKLVEY VAALKELREK AAFRLEELSI KDSSSLWPFV ADREVNKDGF VNNFMAEVKD  180
YN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647890.11e-129PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P5YHG41e-126A0A2P5YHG4_GOSBA; Uncharacterized protein
STRINGGorai.011G055800.11e-122(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.13e-26M-type_MADS family protein