PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08600_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 121aa    MW: 13489.6 Da    PI: 10.0861
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08600_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.13.8e-301479166
                      DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAe 66
                                +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vye +
  Cotton_A_08600_BGI-A2_v1.0 14 PCAACKLLRRRCAHDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEKQ 79
                                7**************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.82413114IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-301479IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MKESGGRKQG AASPCAACKL LRRRCAHDCV FAPYFPADEP HKFANVHKVF GASNVNKMLQ  60
ELPVHQRGDA VSSMVYEKQP AIKLGFELFL IDSKVLRLVK VILQYTQRER ERERGSSGGT  120
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-331083780LOB family transfactor Ramosa2.1
5ly0_B4e-331083780LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3948063e-96GQ394806.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1829 SSR marker DPL0016 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455253.15e-52PREDICTED: LOB domain-containing protein 4-like
RefseqXP_017648532.14e-52PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE96e-46LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0B0NU779e-51A0A0B0NU77_GOSAR; LOB domain-containing 4-like protein
TrEMBLA0A0D2UNR81e-50A0A0D2UNR8_GOSRA; Uncharacterized protein
TrEMBLA0A2P5Q7G31e-50A0A2P5Q7G3_GOSBA; Uncharacterized protein
TrEMBLA0A2P5XK959e-51A0A2P5XK95_GOSBA; Uncharacterized protein
STRINGGorai.011G051200.12e-51(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-48LOB domain-containing protein 4