PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08607_BGI-A2_v1.0
Common NameF383_10128
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 344aa    MW: 38727.4 Da    PI: 8.3038
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08607_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.17.4e-1620115286
                    trihelix   2 WtkqevlaLiearr.emeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..ts 73 
                                 Wt +e+++Liea++ + e+r++r+        k ++ +W++v ++++ +g+ rs++qC++kw+nl ++ykk++e ++k   ++
  Cotton_A_08607_BGI-A2_v1.0  20 WTFNETMVLIEAKEmDYERRMKRSgdhsegrnKPAELRWKWVEDYCWGKGCLRSQNQCNDKWDNLMRDYKKVREYQRKVaeRE 102
                                 *************96333333332222222226999***************************************99984335 PP

                    trihelix  74 essstcpyfdqle 86 
                                 ++ s+ + + ++e
  Cotton_A_08607_BGI-A2_v1.0 103 GNDSKERSYWEME 115
                                 5566677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7831285IPR017877Myb-like domain
PfamPF138374.2E-1219115No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MMDDQGGNNA VTREYRKGNW TFNETMVLIE AKEMDYERRM KRSGDHSEGR NKPAELRWKW  60
VEDYCWGKGC LRSQNQCNDK WDNLMRDYKK VREYQRKVAE REGNDSKERS YWEMEKNERK  120
EKNLPSNMLC QIYDRLEEVV EKKGAQTVAA TAGGGGGSDP NIPNISYVMD RPMVSTFQPS  180
LPPLLQHQLS APISAAIPLP LPQGSPQLPP PPAPIIQPPP LSFAQPLPTI DSDTSEHSDS  240
PAKRRRRGGG NGEGTSGTPN NTNEVSTAIS RSASIIAEAI QASEEREERR HRDLLSFHER  300
RLKIEESKTE INKKGMDGLV DAINKLANSI FALASHKNQS SAPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648110.10.0PREDICTED: trihelix transcription factor ASR3-like isoform X2
TrEMBLA0A0B0MLV80.0A0A0B0MLV8_GOSAR; Trihelix transcription factor GT-4-like protein
STRINGGorai.011G050400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-62Trihelix family protein