PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08680_BGI-A2_v1.0
Common NameF383_02245
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 358aa    MW: 39246.4 Da    PI: 10.0125
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08680_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.1e-31287344359
                                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh+
  Cotton_A_08680_BGI-A2_v1.0 287 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAMDDPMMLIVTYEGDHNHS 344
                                 99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.4E-17238283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.2E-33273345IPR003657WRKY domain
PROSITE profilePS5081130.481280346IPR003657WRKY domain
SuperFamilySSF1182901.24E-26283345IPR003657WRKY domain
SMARTSM007748.8E-37285345IPR003657WRKY domain
PfamPF031068.6E-27287343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAVELMMGYD GGNSFVRKIE ETALNEAKTA GIQGVEELIR LMSKSQQLYN QDASSKTSSP  60
SGSEPAMELQ AITDKTVKSF KKVISLLGQP RTGHARFRRA PLSHLEQEVK HQQQDARQPG  120
QKIPESGDSS LQVAKNQVSA FKPFCSSLGH RLPPLPHNHH QSKSSSLLVP KTGLLERNET  180
ASAINFSSSP PLSDGNSFMS SLTGDTDSMH PSLSSGFQFT SPFHIPCSGK PQFSSSLKRK  240
CNSKDDAALK CGSSSSRCHC SKKRKSRVKR VVRVPAISSK MADIPPDDYS WRKYGQKPIK  300
GSPHPRGYYK CSSVRGCPAR KHVERAMDDP MMLIVTYEGD HNHSHISDSP APLVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21273343271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310810.0KF031081.1 Gossypium hirsutum WRKY transcription factor 32 (WRKY32) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603137.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-107WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0B0PLH80.0A0A0B0PLH8_GOSAR; Putative WRKY transcription factor 7-like protein
STRINGGorai.009G214800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.19e-91WRKY DNA-binding protein 7