PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08735_BGI-A2_v1.0
Common NameF383_07193
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 282aa    MW: 32121.8 Da    PI: 7.0838
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08735_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.5e-19552148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+WT eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Cotton_A_08735_BGI-A2_v1.0  5 RGPWTVEEDFKLINYIAIHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 52
                                89********************************************97 PP
2Myb_DNA-binding51.52.2e-1658101146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Cotton_A_08735_BGI-A2_v1.0  58 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 101
                                 7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.688156IPR017930Myb domain
SuperFamilySSF466892.88E-31299IPR009057Homeodomain-like
SMARTSM007171.1E-15454IPR001005SANT/Myb domain
PfamPF002499.1E-17552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-23659IPR009057Homeodomain-like
CDDcd001672.42E-13752No hitNo description
SMARTSM007171.3E-1457105IPR001005SANT/Myb domain
PROSITE profilePS5129418.70757107IPR017930Myb domain
PfamPF002494.5E-1558101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2360106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDLIRGPWTV EEDFKLINYI AIHGEGRWNS LARCAGLKRT GKSCRLRWLN YLRPDIRRGN  60
ITLEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL KCDVNSKQFK  120
DTMRYLWMPR LVERIQAAAG STTTTTTTTA VVPSASVMGK DFSTQVTPSY TSENSSTATA  180
ASSESFEAQV SPVSDLTNCY NNGFQVTNNN NPNPDYNFQA CSSQVDYYEH SLSAANYYNH  240
GDGGCLDLQT NNYPMLDGAD LSDNLLNAED FLFLQQQFNF NM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2621054106B-MYB
1gv2_A5e-26299197MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633105.10.0PREDICTED: transcription factor MYB108
TrEMBLA0A0B0PBJ90.0A0A0B0PBJ9_GOSAR; Myb-related protein
STRINGGorai.005G068900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.15e-86myb domain protein 78