PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08761_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 1057aa MW: 117788 Da PI: 7.6034

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08761_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129	1.7e-40	156	233	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Cotton_A_08761_BGI-A2_v1.0 156 VCQVEDCRADLSKAKDYHRRHKVCDVHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 233 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	32.077	154	231	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	2.1E-31	154	218	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.83E-37	155	235	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-28	157	230	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	5.29E-7	823	954	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.0E-6	826	942	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.16E-6	827	938	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1057 aa Download sequence Send to blast
GGKPHHFYGP TVSDLKAAEK KSVEWDLNDW KWDGDLFTAT PLNPVPSDCR SRQLFPDGPE 60 NAPNAGPSHS SSSCSEHSSP GNEKGKRKMQ NKKRAVVVLD DDDDDDDDND DDDDDGVKGD 120 AGSLKLQLGG QVYPIMDEDA KWGKKTKVTG TPCRAVCQVE DCRADLSKAK DYHRRHKVCD 180 VHSKATKALV GNVMQRFCQQ CSRFHVLQEF DEGKRSCRRR LAGHNRRRRK THPDNLPTAN 240 SLNDERNSSF LLISLLRILS SMHCKTFGFC KIVANNSDQA KDQDLLAHLL RSLANVACST 300 NGRNLSGFLQ GFHGAANAGR SLGNLEKPND VVSGSTEHVR PSGSASKIDG CANLAEWQGA 360 MGYCRTVPTS DLSHRRANND AQDGILSGSP SRTLIWSGAG FQPRASETGD TVERIRIDKI 420 DLNNVYDDSQ DYVENLERSL VLKNPVNGSL HGSVGVPESL KSSPPQLSKN SDLTPSQSPS 480 TSSGEAQSRT DRIVFKLFGK NPNDFPIALL GSILWKSLFQ ILEWLSHSPT DIESYIRPGC 540 IILTIYLCLR ESAWEELCYD LGSSLRRLVD VSNDSFWKTG WVYARVQHSV AFIYNGRVVL 600 DAPLPLKSHR NCKISSIKPI AVSVTERAQF VVKGFNLNQS STRLLCAVEG KYLVQETCYD 660 LMDAVDPINE QDKLQHLCFL CPIPNVSGRG FIEVEDFGLS STFFPFIVAE QEVCSEICTL 720 EGVIETAVPT VDINKNEEKM ETRNQALDFI HEMGWLLHRN HLNRKLGDMN PNLNLFPFRR 780 FKWLMEFSMD HDWCAVVKKL LGILFDRTVD LGDHSSMEFA LLDMCLLHRA VRRNCRPMVE 840 LLLRYVPNKV LDKPGSKQKL SVDGNDYGFM FKPNVVGPAG LTPLHVVASR EGCENVLDAL 900 TDDPGLVAIE AWKSAQDCTG LTPNDYARLQ GHYSYIHLVQ RKINKKSECG YVVLDIPGTP 960 LDCNSKQKLS DGTRSAMAVS LEIQKIKKKP RQDGCKACEK KLAYGNRTTS LVYRPTMLSM 1020 VAIAAVCVCV ALLFKSSPEV LYVFRPFRWE LLKYGSS

Sequence ? help Back to Top

Protein Sequence Length: 1057 aa Download sequence Send to blast

GGKPHHFYGP TVSDLKAAEK KSVEWDLNDW KWDGDLFTAT PLNPVPSDCR SRQLFPDGPE  60
NAPNAGPSHS SSSCSEHSSP GNEKGKRKMQ NKKRAVVVLD DDDDDDDDND DDDDDGVKGD  120
AGSLKLQLGG QVYPIMDEDA KWGKKTKVTG TPCRAVCQVE DCRADLSKAK DYHRRHKVCD  180
VHSKATKALV GNVMQRFCQQ CSRFHVLQEF DEGKRSCRRR LAGHNRRRRK THPDNLPTAN  240
SLNDERNSSF LLISLLRILS SMHCKTFGFC KIVANNSDQA KDQDLLAHLL RSLANVACST  300
NGRNLSGFLQ GFHGAANAGR SLGNLEKPND VVSGSTEHVR PSGSASKIDG CANLAEWQGA  360
MGYCRTVPTS DLSHRRANND AQDGILSGSP SRTLIWSGAG FQPRASETGD TVERIRIDKI  420
DLNNVYDDSQ DYVENLERSL VLKNPVNGSL HGSVGVPESL KSSPPQLSKN SDLTPSQSPS  480
TSSGEAQSRT DRIVFKLFGK NPNDFPIALL GSILWKSLFQ ILEWLSHSPT DIESYIRPGC  540
IILTIYLCLR ESAWEELCYD LGSSLRRLVD VSNDSFWKTG WVYARVQHSV AFIYNGRVVL  600
DAPLPLKSHR NCKISSIKPI AVSVTERAQF VVKGFNLNQS STRLLCAVEG KYLVQETCYD  660
LMDAVDPINE QDKLQHLCFL CPIPNVSGRG FIEVEDFGLS STFFPFIVAE QEVCSEICTL  720
EGVIETAVPT VDINKNEEKM ETRNQALDFI HEMGWLLHRN HLNRKLGDMN PNLNLFPFRR  780
FKWLMEFSMD HDWCAVVKKL LGILFDRTVD LGDHSSMEFA LLDMCLLHRA VRRNCRPMVE  840
LLLRYVPNKV LDKPGSKQKL SVDGNDYGFM FKPNVVGPAG LTPLHVVASR EGCENVLDAL  900
TDDPGLVAIE AWKSAQDCTG LTPNDYARLQ GHYSYIHLVQ RKINKKSECG YVVLDIPGTP  960
LDCNSKQKLS DGTRSAMAVS LEIQKIKKKP RQDGCKACEK KLAYGNRTTS LVYRPTMLSM  1020
VAIAAVCVCV ALLFKSSPEV LYVFRPFRWE LLKYGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-30	156	230	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	984	990	KIKKKPR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622309	0.0	KJ622309.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633486.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A1U8NVV0	0.0	A0A1U8NVV0_GOSHI; squamosa promoter-binding-like protein 1 isoform X1
STRING	Gorai.005G071400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1