PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08824_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 239aa    MW: 26884.2 Da    PI: 4.7071
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08824_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.19.4e-232770245
                                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                + en+snrqvtfskRr+g++KKA EL++LC+ ++ +i+fs++gk
  Cotton_A_08824_BGI-A2_v1.0 27 KLENESNRQVTFSKRRTGLFKKAIELCILCGCNIGIIVFSPKGK 70
                                679****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-311877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.3571878IPR002100Transcription factor, MADS-box
CDDcd002652.55E-371995No hitNo description
SuperFamilySSF554551.26E-271992IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-202040IPR002100Transcription factor, MADS-box
PfamPF003197.4E-242874IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-204055IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-205576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MASLNQTRSS NTTTKATRGR QRISIKKLEN ESNRQVTFSK RRTGLFKKAI ELCILCGCNI  60
GIIVFSPKGK PFCFGHPDID TILERYLSKN PNHDDGLMMS GDDIAPCLEE FNEEIRETLE  120
KLEEEKKRSK EIQKENEERK MKGLFWWDDP IDNNMGIEEL EAYAKALEEL RNNVANRASA  180
LMEDVFAMST AMTVANPDGM GNSFAVQNSG FAVGDTEGYG DFNLGVEGFN FGNGHDLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-1819108288MEF2C
5f28_B4e-1819108288MEF2C
5f28_C4e-1819108288MEF2C
5f28_D4e-1819108288MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613841.11e-179PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1U8N4181e-159A0A1U8N418_GOSHI; agamous-like MADS-box protein AGL61
STRINGGorai.N026300.11e-151(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15814714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.19e-23M-type_MADS family protein