PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08888_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 88aa    MW: 9716.87 Da    PI: 10.1749
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08888_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-091458344
                                SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
             Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                 WT+   +l+ +a +q+ ++   +W  +a+ +g  +t++++k ++
  Cotton_A_08888_BGI-A2_v1.0 14 TWTPKQNKLFEKALAQFDKDtpdRWQNVAKAVGGSKTAEEVKRHY 58
                                7********************************99*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.4111065IPR017884SANT domain
SMARTSM007171.6E-71164IPR001005SANT/Myb domain
SuperFamilySSF466895.38E-121369IPR009057Homeodomain-like
CDDcd001672.83E-61458No hitNo description
PfamPF002496.5E-71458IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.150.606.9E-43771IPR001606ARID DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MASSSLRSKD SGSTWTPKQN KLFEKALAQF DKDTPDRWQN VAKAVGGSKT AEEVKRHYEI  60
LIQDLEHIES GRIPIPKYKS SGGGGNGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-30883478RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153531e-123JX615353.1 Gossypium hirsutum clone NBRI_GE59294 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614643.16e-60PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB88e-34RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1U8NKE41e-57A0A1U8NKE4_GOSHI; protein RADIALIS-like 3
TrEMBLA0A2P5X5241e-57A0A2P5X524_GOSBA; Uncharacterized protein
STRINGGorai.012G155400.14e-52(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-36RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]