PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08943_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 300aa MW: 33808.9 Da PI: 8.1492

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08943_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.9	7.7e-08	166	211	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+e r+RR++ ++ L++l+P++ kK++ a++L++A +YI+ Lq Cotton_A_08943_BGI-A2_v1.0 166 HSELARKRRQKRSDKTRCLQKLMPWD-----KKMDMATMLQEAYKYIRFLQ 211 89999******************9.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.919	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.16E-11	163	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.53E-8	165	215	No hit	No description
Pfam	PF00010	2.4E-5	166	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-10	166	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-6	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEEYNFCSTL HPLHSYAPSP FTSSVHNTEF NNMMINSHEP KLFNDPNLRS LLPLPYEPDG 60 PCCFFTPDPD PDPIFPSLPL PDLDFSLFSS DIPDPASHPL LNLPSPPLFL SDLRPLHRLP 120 PLSASSTPKS KRTRLDLVLS HSDNNPQTLD SIVKSSNAPP PPIIPHSELA RKRRQKRSDK 180 TRCLQKLMPW DKKMDMATML QEAYKYIRFL QAQVSILQSM PITSSFVSTT QHLNNASFEV 240 GFAGLGRLNR QQLLQVLINS PVAQTMLCSQ GLCVFATEQL VSLNKAKERK TMLQQFLFGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633239.1	0.0	PREDICTED: transcription factor bHLH117
TrEMBL	A0A1U8HSU5	0.0	A0A1U8HSU5_GOSHI; transcription factor bHLH117-like
STRING	Gorai.005G208700.1	1e-179	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13399	22	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	1e-22	bHLH family protein