PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08944_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 129aa MW: 14860.4 Da PI: 10.5929

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08944_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.9	2e-21	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kri+n rq+ +skR +gilKKA ELS+LC+a+v +++fs+tg+l y Cotton_A_08944_BGI-A2_v1.0 9 KRIDNPCSRQIAYSKRGKGILKKATELSTLCGADVGLLMFSPTGRLTSYT 58 79********************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.619	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.9E-26	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.68E-22	2	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.5E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-20	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.5E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.5E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MGRKRLLIKR IDNPCSRQIA YSKRGKGILK KATELSTLCG ADVGLLMFSP TGRLTSYTHK 60 GRTLERKLCE LNWKIYEAQE KMRSYSPDVS NIYSIAEAQH HQQFVTKAIQ RIEKFKKTKL 120 LEKETSPSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632490.1	3e-75	PREDICTED: agamous-like MADS-box protein AGL104
TrEMBL	A0A2P5Y5J3	8e-77	A0A2P5Y5J3_GOSBA; Uncharacterized protein
STRING	Gorai.005G208800.1	2e-64	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16598	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	2e-19	AGAMOUS-like 44