PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08973_BGI-A2_v1.0

Common Name

F383_09662

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 258aa MW: 26740 Da PI: 10.3893

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08973_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124	1.6e-38	29	113	2	87
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ s s ++ Cotton_A_08973_BGI-A2_v1.0 29 AVKKPPTKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStV--SVSLRGA 109 78**************************************************************9999977732..3333332 PP TCP 84 nsss 87 ns+s Cotton_A_08973_BGI-A2_v1.0 110 NSTS 113 2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-33	35	119	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.287	35	89	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSNSETAATN GSLMDPPRHQ APAANGSLAV KKPPTKDRHS KVDGRGRRIR MPIICAARVF 60 QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TVSVSLRGAN STSLSSTTSS 120 FSLDHKPLLG PTPFILGKRV RSDDDNAGKD DSGGLTVGPG VGSIVGPNGT HPGGFWALPA 180 RPDFGQLWSF AAPPPPDLVV QAAAQQPATA AALFVQQQQA MGEASAARVG NYLPGHLNLL 240 ASLSGAPGGS GRRDEDPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017634045.1	0.0	PREDICTED: transcription factor TCP21
Refseq	XP_017634046.1	0.0	PREDICTED: transcription factor TCP21
Swissprot	Q9FMX2	2e-95	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0B0PBL2	0.0	A0A0B0PBL2_GOSAR; Transcription factor TCP7-like protein
STRING	Gorai.005G211900.1	1e-162	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-70	TCP family protein