PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09279_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 135aa    MW: 15393.3 Da    PI: 6.506
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09279_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer83.72.1e-262687360
                 ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmps...egee.gtaaalkCaACgCHRnFHRreveee 60
                                 v+YkeC++NhA +lG ++vDGCgEf p+   +++e g++  + C ACgCHRnFHR+ev+++
  Cotton_A_09279_BGI-A2_v1.0 26 DVKYKECKRNHAPQLGINVVDGCGEFAPKgmsPSSEtGHVVDFDCEACGCHRNFHRKEVTKQ 87
                                589***********************9862223344478999****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-222784IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-142794IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-232884IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.0922983IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MASNFFEQKP FKPPFEIIAR RTKTLDVKYK ECKRNHAPQL GINVVDGCGE FAPKGMSPSS  60
ETGHVVDFDC EACGCHRNFH RKEVTKQVSI TFIDNEGANL YRFQPRSPQL NNEQEAVENE  120
ELDGIMKKPK NDESM
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022719697.18e-49mini zinc finger protein 1-like
SwissprotQ9M9S02e-16ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2P5RM181e-90A0A2P5RM18_GOSBA; Uncharacterized protein
STRINGGorai.007G274100.12e-82(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2215545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-18homeobox protein 31