PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_09358_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 982aa MW: 106037 Da PI: 8.3838

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_09358_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	5.8e-06	465	485	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ G++CkF+H+ Cotton_A_09358_BGI-A2_v1.0 465 YCRHYLK-GRCHEGEKCKFSHD 485 5****.***********7 PP
2	zf-CCCH	20	1.2e-06	519	539	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C ++ G C++Gd C F+H Cotton_A_09358_BGI-A2_v1.0 519 PCINYTTKGSCSRGDDCLFSH 539 7******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.554	460	487	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.98E-6	461	485	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0089	461	486	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	489	515	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.652	489	513	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.915	514	542	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.34	517	541	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.97E-6	518	545	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.4E-4	519	540	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 982 aa Download sequence Send to blast
FPPHRRSHLR SVTYRNLVRL MSLCYGDSPL ATAPPIIPLP QTPDNGGNRG EQGGDDVREP 60 GESIVSDSRE PVNMVANGGS EGAVFRDKGL NDTQMVIDEI EQIMGMDDGQ DLFDQNDMMV 120 NSSMKGNGFQ DGEIGREQML IADLENIMKG NEDCHQISNC SAATLGENQG DNCSGILLNN 180 QDKHNDCPPV VMESGTVGQT QVDMEGGNQK NIDPFGISSN KSLAVEVSKL SGKVKDQSSS 240 LKTNLMHEKN EIQQKEMELE NIIPSNEGMC SPGPVVEKGE PEEGEIFGES LLVNESIDIL 300 LDDAVVSEKK VDDAVVSGKK VEETLISGGT FDDKHPYCNE ESTVNDGTSE FTFVNTNVAP 360 IANKVTTGEF KGSETGQMVY ELGMMQRKEC SGKIQKQIGH KNKVIETKSK KDVGLSNKKS 420 QILTPAQKKE KKKKNKRKKR AEKNRQLGVK RLKVQTVLKP KTVTYCRHYL KGRCHEGEKC 480 KFSHDTVPLT KSQPCSHFAR QSCMKGNDCP FDHQLSKYPC INYTTKGSCS RGDDCLFSHK 540 KPLEGDVASL SIAPDLPLKS SLQSDSDIGL NISRAPPKNA NALSYSLGGF SDKSKKQIVA 600 DSLSKTPNLA CKVVNSLFVS KSSIAESIQL NQGSLSQKMN ESGRVGSQSN QRMLGVRGPA 660 TKPSVAESSK FIQGSSSLNM NGSGRLGIQG HQSESHTIQN GNDGPKKKPE MVPRGINFLS 720 FGKSSLEDST RKVSLANGAD GYKQQPSDIE GGGGKFSSQL TPNTSSTDKK KTHPAVVPPG 780 INLTLGKLVS SESSTSSSLP YCSDNVNNGS LPKINYTAGE QRNSSAMSYK LPVSPQTSGQ 840 SSEWLAHKST PNSAREALIS TLAVAKKFDD VKGKSVHGSQ QLSDKQYDSN ANPWKMPASL 900 LTTGQSSENI TPKSTPNSSQ KALMSTLAFA TMFEFGMKKN QSAIRTAVNS ETGDSRTGEG 960 TKTDAKTSKL LDILSSVGSK IK

Sequence ? help Back to Top

Protein Sequence Length: 982 aa Download sequence Send to blast

FPPHRRSHLR SVTYRNLVRL MSLCYGDSPL ATAPPIIPLP QTPDNGGNRG EQGGDDVREP  60
GESIVSDSRE PVNMVANGGS EGAVFRDKGL NDTQMVIDEI EQIMGMDDGQ DLFDQNDMMV  120
NSSMKGNGFQ DGEIGREQML IADLENIMKG NEDCHQISNC SAATLGENQG DNCSGILLNN  180
QDKHNDCPPV VMESGTVGQT QVDMEGGNQK NIDPFGISSN KSLAVEVSKL SGKVKDQSSS  240
LKTNLMHEKN EIQQKEMELE NIIPSNEGMC SPGPVVEKGE PEEGEIFGES LLVNESIDIL  300
LDDAVVSEKK VDDAVVSGKK VEETLISGGT FDDKHPYCNE ESTVNDGTSE FTFVNTNVAP  360
IANKVTTGEF KGSETGQMVY ELGMMQRKEC SGKIQKQIGH KNKVIETKSK KDVGLSNKKS  420
QILTPAQKKE KKKKNKRKKR AEKNRQLGVK RLKVQTVLKP KTVTYCRHYL KGRCHEGEKC  480
KFSHDTVPLT KSQPCSHFAR QSCMKGNDCP FDHQLSKYPC INYTTKGSCS RGDDCLFSHK  540
KPLEGDVASL SIAPDLPLKS SLQSDSDIGL NISRAPPKNA NALSYSLGGF SDKSKKQIVA  600
DSLSKTPNLA CKVVNSLFVS KSSIAESIQL NQGSLSQKMN ESGRVGSQSN QRMLGVRGPA  660
TKPSVAESSK FIQGSSSLNM NGSGRLGIQG HQSESHTIQN GNDGPKKKPE MVPRGINFLS  720
FGKSSLEDST RKVSLANGAD GYKQQPSDIE GGGGKFSSQL TPNTSSTDKK KTHPAVVPPG  780
INLTLGKLVS SESSTSSSLP YCSDNVNNGS LPKINYTAGE QRNSSAMSYK LPVSPQTSGQ  840
SSEWLAHKST PNSAREALIS TLAVAKKFDD VKGKSVHGSQ QLSDKQYDSN ANPWKMPASL  900
LTTGQSSENI TPKSTPNSSQ KALMSTLAFA TMFEFGMKKN QSAIRTAVNS ETGDSRTGEG  960
TKTDAKTSKL LDILSSVGSK IK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	768	772	KKKTH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589643	4e-48	JX589643.1 Gossypium hirsutum clone NBRI_GE24379 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017645839.1	0.0	PREDICTED: uncharacterized protein LOC108486343 isoform X1
TrEMBL	A0A1U8MKP8	0.0	A0A1U8MKP8_GOSHI; uncharacterized protein LOC107937725 isoform X1
STRING	Gorai.009G032200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17241	7	8