PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09474_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 214aa    MW: 23928.2 Da    PI: 8.4647
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09474_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.73.7e-3322117195
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilk 82 
                                 aCaaCk++r+kC ++C+lapyfpa++ ++f++vhk+FG+sn +k+++++ ++e+r+++++sl++eA ++++dPv G +g ++k
  Cotton_A_09474_BGI-A2_v1.0  22 ACAACKHQRKKCDENCILAPYFPADKCREFQAVHKVFGVSNATKIVRNAnSDEDRKKVADSLIWEAFCWQKDPVLGPYGDYRK 104
                                 7**********************************************9945566***************************** PP

                      DUF260  83 lqqqleqlkaela 95 
                                 + ++l+  k++ +
  Cotton_A_09474_BGI-A2_v1.0 105 IYEELSLYKKQSQ 117
                                 **99998887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.01621123IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-3222118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MQRETSNGVA AAAAAASRVH PACAACKHQR KKCDENCILA PYFPADKCRE FQAVHKVFGV  60
SNATKIVRNA NSDEDRKKVA DSLIWEAFCW QKDPVLGPYG DYRKIYEELS LYKKQSQMML  120
LQDHDHQPTH PVFKMGPAQA VTPTKRLIDV KGAISDGTLR CYNPDVDVNS LVGFSGYPYP  180
SQSEKPVQEK AIHNTTTIVP LQYYASAGNF SHFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-162311512103LOB family transfactor Ramosa2.1
5ly0_B7e-162311512103LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628720.11e-156PREDICTED: LOB domain-containing protein 4-like
TrEMBLA0A1U8L6F81e-154A0A1U8L6F8_GOSHI; LOB domain-containing protein 4-like
STRINGGorai.007G069400.11e-145(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105392635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-39LOB domain-containing protein 2