PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09522_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 689aa    MW: 74954.9 Da    PI: 5.4157
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09522_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06264284526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 +C+ f++ G C+ Gd+C +aHg
  Cotton_A_09522_BGI-A2_v1.0 264 PCPEFRK-GSCRQGDNCEYAHG 284
                                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.208.2E-1418138IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.46E-1323136IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.92860130IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0076090IPR002110Ankyrin repeat
PfamPF136372.4E-761113No hitNo description
CDDcd002044.81E-1062135No hitNo description
SMARTSM002480.04495127IPR002110Ankyrin repeat
PROSITE profilePS5008811.70195130IPR002110Ankyrin repeat
SMARTSM003565.0E-5259285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4263286IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4264284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094264286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-4292322IPR000571Zinc finger, CCCH-type
SMARTSM0035625294317IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.174294318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MEGESHKEEG LPQKLSILLE LSASNDLIGF RRAIEEEGYD IDESSLWYGR RMGSKKLGFD  60
ERTPLLVASM FGSKDVVNYI IKSGCVDVNR ACGSDGATAL HCAAAGGSFE SAEVVKILLG  120
ASADTTSVDA NENRPSDLID PDLDSAFSSK KKMLGFLLKG KETVGQIAGL HAQVGNEMEG  180
QEQQQNSMAQ ALKEGTEKKE YPVDLTLPDI KNGIYGTDEF RMYTFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYHY SCVPCPEFRK GSCRQGDNCE YAHGIFECWL HPAQYRTRLC  300
KDETNCTRRV CFFAHKPEEL RPLYASTGSA VPSPRSYSAT GSSLDVGSMS PLALGSPSIM  360
IPPTSTPPLT PTGATSPMGG AMWPNQSNIL PPTLQLPGSR LKAALSAWDM DLDMELFGLE  420
SHHLHQHKQL IDEISGISSP TSWNNPLSTA SAFSASGDRN GELNRFGGVK PTSLEDIFGC  480
LDPNNLPQLQ GNSLDAAAPQ LQSPTGLRMR PNINQQLRAS YPTNLASSPV RVSPSFGIEP  540
SGPTAATLLS SRSAAFAYRS QSFIERTAVN CHSGIFSPAS SANAVPSNLS DWGSPDGRLD  600
WGIQGEELNK MRKSASFGFR SNFRNAVLSM SSSSDEPDVF RVQSLAKDTS SGQLSLEDEQ  660
QQCHLSSGGA EMLPAWMEQL YAEQEQMVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615053.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2P5S8X00.0A0A2P5S8X0_GOSBA; Uncharacterized protein
STRINGGorai.001G116400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein