PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_09531_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 204aa MW: 23396.1 Da PI: 11.0309

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_09531_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	53.7	5.9e-17	14	103	4	98
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 +r++se+Dei +L+ li +++ + + ++ + ++++ +++ sq+++KirrL++K +++ ++ ++++hd+ Cotton_A_09531_BGI-A2_v1.0 14 SRVFSESDEIQILKCLIRATKSIPPPITTVGTSTINRIIRRLDHRFTVSQITDKIRRLRDKHHNHARN-----RALVRNHHDR 91 69*************997777755555667889999999*******************9999.....778999 PP DUF573 87 kifelskkiWgs 98 if+lsk+iWg+ Cotton_A_09531_BGI-A2_v1.0 92 RIFKLSKRIWGK 103 ********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.8E-17	14	102	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MSTTPPSTAP NGRSRVFSES DEIQILKCLI RATKSIPPPI TTVGTSTINR IIRRLDHRFT 60 VSQITDKIRR LRDKHHNHAR NRALVRNHHD RRIFKLSKRI WGKKATPRKK NNKSEDQGAI 120 EVGGDGVEKL DKFPYLVAEF SKVLPENEVW KQKMKRVGEE KLRKMDQEWV MLKVEEAKLV 180 AKKAELIQQQ IMEVMGGNGS ANGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017630862.1	1e-150	PREDICTED: uncharacterized protein LOC108473653
TrEMBL	A0A2P5WU03	1e-148	A0A2P5WU03_GOSBA; Uncharacterized protein
STRING	Gorai.001G117300.1	1e-146	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17149	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	1e-10	DNA-binding storekeeper protein-related transcriptional regulator