PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_09623_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 292aa MW: 32611.1 Da PI: 5.8691

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_09623_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.8	4.7e-33	151	209	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCts+gC vkk+vers +d++++++tYeg+H+h+ Cotton_A_09623_BGI-A2_v1.0 151 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSSGCGVKKRVERSFDDTTIIITTYEGKHTHP 209 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-34	136	211	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-29	144	211	IPR003657	WRKY domain
PROSITE profile	PS50811	32.592	146	211	IPR003657	WRKY domain
SMART	SM00774	1.2E-38	151	210	IPR003657	WRKY domain
Pfam	PF03106	7.2E-27	152	209	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MRFSDENSTA AAESGGGDGG GDKWDSLGFM ELLGIHQDFF ESFIQQPALI LSPPLLQLDT 60 EQKPQAGLQS QPYSTVSDFS ECLNNPPATP NSSSISSLSN EAANINEEST NAGDDEEQDK 120 TKKRLKHKEK NQKKQKEPRF AFITKTEIDH LDDGYRWRKY GQKAVKNSPY PRSYYRCTSS 180 GCGVKKRVER SFDDTTIIIT TYEGKHTHPC PVPPRGSGFG NIGLTPSFMV HHQYQDQQQQ 240 EVEQPYMYAS LSPLNPCFSP NGSSSASLIR DHGLLQDIVL PIKMRNEANE QV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-28	139	211	2	74	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM438472	0.0	KM438472.1 Gossypium aridum WRKY78 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610006.1	0.0	PREDICTED: probable WRKY transcription factor 23
Swissprot	O22900	3e-52	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A2P5W6S4	0.0	A0A2P5W6S4_GOSBA; Uncharacterized protein
STRING	Gorai.006G265200.1	1e-174	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	5e-45	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]