PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09714_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 286aa    MW: 31575.7 Da    PI: 10.1815
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09714_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-1398142246
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 ++WT+eE+  ++ + ++lG+g+W+ I++ +  +Rt+ q+ s+ q+
  Cotton_A_09714_BGI-A2_v1.0  98 KPWTEEEHRTFLAGLRKLGKGDWRGISKNFVPTRTPTQVASHAQN 142
                                 58*****************************9**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.70992148IPR017930Myb domain
SuperFamilySSF466891.15E-1394142IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-1395141IPR006447Myb domain, plants
SMARTSM007171.5E-996146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-1298139IPR009057Homeodomain-like
PfamPF002492.0E-1198142IPR001005SANT/Myb domain
CDDcd001671.04E-1099142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVKEAGRKCS HCGHNGHNSR TCYVHNSRCC NGKGGCVKLF GVKIGAMYQK QENVMKKSFS  60
MGNLQSHAEN NNDDDGYFSD GQIQSKKHKA SHERKRGKPW TEEEHRTFLA GLRKLGKGDW  120
RGISKNFVPT RTPTQVASHA QNASPSDSPS EETTRSSPQT AKPFPHHCLD DRPIRSLTES  180
HSFPTYYYLG TTQPMAPEAK LMAFLPFMHA NAMNHAAPRY INTKALVNVA AHPSGIPSPR  240
SVHHSMFRAG PSASSTEKDV LELKIGPPQS PKNAIILPSH ASIRVI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609309.10.0PREDICTED: uncharacterized protein LOC108455236
TrEMBLA0A2P5VY250.0A0A2P5VY25_GOSBA; Uncharacterized protein
STRINGEOY227621e-115(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-55MYB_related family protein