PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09977_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 230aa    MW: 24672.9 Da    PI: 7.2137
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09977_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-1569117255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  y+G+r++  +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++  ++ l+g
  Cotton_A_09977_BGI-A2_v1.0  69 LYHGIRRR--SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVGALTLKG 117
                                 699**854..6*********843...5*******************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.07E-2568127No hitNo description
PfamPF008477.2E-968116IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1769127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-2569126IPR001471AP2/ERF domain
SMARTSM003807.5E-2469131IPR001471AP2/ERF domain
PROSITE profilePS5103219.09869125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MADPNNPTNV PQLNQSSPRP VPLSLDQHSL ITTNSHTCQN PPTCHGLPPP TPRKATMASA  60
SSPSGKHPLY HGIRRRSGKW VSEIREPRKT TRIWLGTYPT PEMAAAAYDV GALTLKGAEA  120
FVNFPASVAS YPLPASILSA DIRKAAAAAA LLKKAESKGI EIDLGSGHPH PAKKEEMTST  180
EEYMDKDVFL NLPNLLVDMA EGLLVSPLRL SSTPSDDSPG NSDGESLWSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717049.11e-146PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ905e-49ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1U8LUZ11e-145A0A1U8LUZ1_GOSHI; ethylene-responsive transcription factor ERF027-like
STRINGGorai.004G208000.11e-137(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-47ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]