PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09986_BGI-A2_v1.0
Common NameF383_33103
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 304aa    MW: 33802.6 Da    PI: 4.7629
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09986_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.7e-36211122102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d++++++isw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++
  Cotton_A_09986_BGI-A2_v1.0  21 FLTKTYQLVDDPSVNDMISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFAND 94 
                                 9*****************************************************************99.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                  F++g+k ll++i+r+k 
  Cotton_A_09986_BGI-A2_v1.0  95 CFRRGEKGLLRDIQRRKM 112
                                 ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.0E-5817110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.4E-3818110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3518110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.5E-3221110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-202144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-205971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1707.6E-4164189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
QPSESTASGA ADSQRSLPTP FLTKTYQLVD DPSVNDMISW NEDGSTFIVW RPAEFARDLL  60
PKYFKHNNFS SFVRQLNTYG FRKVVPDRWE FANDCFRRGE KGLLRDIQRR KMTPTTTAPA  120
ATVTVAAIPC KVSPSNSGDE QVISSNSPPL ATVLHRTTSS TTPELLEENE RLRKENMQLN  180
HELTQLKGLC NNILTLMTNY ASGQSENNSN SAEGKALDLL PAKNSGTKAE GMGPKEAVDM  240
EEDVTPKLFG VSIGLKRVRR EDSVEEQNNN QEQQQEMECE AGVKAEPLDG KSDDQDSSWL  300
ELGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-262111029129Heat shock factor protein 1
5d5v_B4e-262111029129Heat shock factor protein 1
5d5v_D4e-262111029129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024510.0KJ702451.1 Gossypium hirsutum heat shock transcription factor (HSF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626095.10.0PREDICTED: heat stress transcription factor B-2b-like
RefseqXP_017626096.10.0PREDICTED: heat stress transcription factor B-2b-like
RefseqXP_017626097.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-105HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1U8LJP10.0A0A1U8LJP1_GOSHI; heat stress transcription factor B-2b-like
STRINGGorai.004G208800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-88HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]