PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_10100_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 239aa MW: 26758.2 Da PI: 4.9554

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_10100_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68	8.9e-22	27	70	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+s rqvtfskRr+g++KKA EL++LC+ ++ +i+fs++gk Cotton_A_10100_BGI-A2_v1.0 27 KLENESSRQVTFSKRRTGLFKKAIELCILCGCNIGIIVFSPKGK 70 679****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-31	18	77	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.245	18	78	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.15E-27	19	92	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.10E-35	19	95	No hit	No description
PRINTS	PR00404	5.9E-20	20	40	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-23	28	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-20	40	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-20	55	76	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MASLNQTRSS NTTTKATRGR QKIPIKKLEN ESSRQVTFSK RRTGLFKKAI ELCILCGCNI 60 GIIVFSPKGK PFCFGHPDID TILESYLSKN PNHDDGLMMS GDDIAPCLEE FNEEIRETLE 120 KLEEEKKRSK EIQKEKEERK MKGLFWWDDP IDNNMGIEEL EAYAKALEEL RNNVANRASA 180 LLEDVFAMSI AMTVANPDGM GNSFAVQNSG FAVGDTGGYG NFNLGVEGFN FSHGHDLDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	2e-17	19	108	1	87	Myocyte-specific enhancer factor 2A
3kov_B	2e-17	19	108	1	87	Myocyte-specific enhancer factor 2A
3kov_I	2e-17	19	108	1	87	Myocyte-specific enhancer factor 2A
3kov_J	2e-17	19	108	1	87	Myocyte-specific enhancer factor 2A
3p57_A	2e-17	19	108	1	87	Myocyte-specific enhancer factor 2A
3p57_B	2e-17	19	108	1	87	Myocyte-specific enhancer factor 2A
3p57_C	2e-17	19	108	1	87	Myocyte-specific enhancer factor 2A
3p57_D	2e-17	19	108	1	87	Myocyte-specific enhancer factor 2A
3p57_I	2e-17	19	108	1	87	Myocyte-specific enhancer factor 2A
3p57_J	2e-17	19	108	1	87	Myocyte-specific enhancer factor 2A
5f28_A	2e-17	19	108	2	88	MEF2C
5f28_B	2e-17	19	108	2	88	MEF2C
5f28_C	2e-17	19	108	2	88	MEF2C
5f28_D	2e-17	19	108	2	88	MEF2C
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622286.1	1e-179	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A1U8N418	1e-157	A0A1U8N418_GOSHI; agamous-like MADS-box protein AGL61
STRING	Gorai.N026300.1	1e-151	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15814	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	5e-23	AGAMOUS-like 61