PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10166_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 248aa    MW: 27463.3 Da    PI: 7.6395
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10166_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.73.6e-312109199
                                 EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                 f+k ltpsdv+k++rlv+pk++ae+h         + + +++  l++edesg+ W ++++y+++s++yvltkGW+++vk+++L
  Cotton_A_10166_BGI-A2_v1.0   2 FEKPLTPSDVGKLNRLVIPKQHAEKHfplggsggdSVVYNKGLLLSFEDESGKCWCFRYSYWNSSQSYVLTKGWSRYVKEKQL 84 
                                 99***************************999776333447889*************************************** PP

                                 -TT-EEEEEE-SSSEE..EEEEE-S CS
                          B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                                 ++gD+++F++++ + ++l+++++r+
  Cotton_A_10166_BGI-A2_v1.0  85 DAGDIILFQRHRLDAERLFIGWRRR 109
                                 *********75559999*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-361110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-271100No hitNo description
SuperFamilySSF1019369.42E-291107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.0282110IPR003340B3 DNA binding domain
SMARTSM010193.2E-242110IPR003340B3 DNA binding domain
PfamPF023624.3E-282109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MFEKPLTPSD VGKLNRLVIP KQHAEKHFPL GGSGGDSVVY NKGLLLSFED ESGKCWCFRY  60
SYWNSSQSYV LTKGWSRYVK EKQLDAGDII LFQRHRLDAE RLFIGWRRRG AALDGGNAEL  120
GNNSGGVRGG DNSGWSSSRG LYQGNPYPGH IQGQCHGANV PYQHDCLHAG SMAENQGPGG  180
NPKRLLRLFG VNLECHLDDS SEPSTPDSSS VSSQGPTSTH HFYSQSYTSD YMDIGFSRDM  240
NQMNNHRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-4611097113B3 domain-containing transcription factor NGA1
5os9_B2e-4611097113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622107.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8RYD33e-67Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A1U8LF270.0A0A1U8LF27_GOSHI; B3 domain-containing protein At2g36080-like
STRINGGorai.002G237900.11e-167(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.15e-67B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]