PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_10241_BGI-A2_v1.0

Common Name

F383_02109

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 201aa MW: 22084.4 Da PI: 9.9927

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_10241_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.5	1.9e-32	106	162	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +ksrkpylheSRh hAlrR+RgsgGrF Cotton_A_10241_BGI-A2_v1.0 106 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IKSRKPYLHESRHLHALRRARGSGGRF 162 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.0E-36	104	165	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.834	105	165	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.8E-27	107	162	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.6E-24	108	130	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	110	130	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.6E-24	139	162	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MPREAPKNDN EIGEQQKHSE PHNQSSSPAT GLSPSAITTP NIPYTTSQHA VAPATYPYPD 60 PYYRSIFAPY DAQPYPPQPY GGQPMVHLQL MGIQQAGVPL PSGAVEEPVF VNAKQYHGIL 120 RRRQSRAKAE SENKAIKSRK PYLHESRHLH ALRRARGSGG RFLNSKKNES KQNDAASGDK 180 SQSNINLNSN KSEVSSVEGT S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-21	105	170	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM472177	5e-53	AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647119.1	1e-140	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_017647120.1	1e-140	PREDICTED: nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	1e-66	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0B0MDY5	1e-138	A0A0B0MDY5_GOSAR; Nuclear transcription factor Y subunit A-7
STRING	Gorai.011G004400.1	1e-126	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4168	27	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-53	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]