PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10311_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 232aa    MW: 26219.4 Da    PI: 5.3477
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10311_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.8e-144890246
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                g +++eEd ++  +   lG++ W+ Ia+ ++ gRt++++k++w++
  Cotton_A_10311_BGI-A2_v1.0 48 GGFSEEEDNIICSLYSTLGSR-WSIIAAQLP-GRTDNDIKNHWNT 90
                                569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.215141IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-122753IPR009057Homeodomain-like
SuperFamilySSF466893.01E-222796IPR009057Homeodomain-like
PROSITE profilePS5129423.4464296IPR017930Myb domain
SMARTSM007171.2E-124694IPR001005SANT/Myb domain
PfamPF002491.5E-124890IPR001005SANT/Myb domain
CDDcd001676.33E-95089No hitNo description
Gene3DG3DSA:1.10.10.602.3E-195493IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSILLKERSF WSVVKEVEES LNSESLKRCG KSCRLRWLNY LRPDIKHGGF SEEEDNIICS  60
LYSTLGSRWS IIAAQLPGRT DNDIKNHWNT KLKKKLLTAK IKGGNNEITT TMSAAPFCKA  120
LGSNGSSSTT SSSYMTDLKT YQQKYYEYPA LILDQTDQFP MPYLPFENNY GAAWCSNRVG  180
NEGQGMMDHF VDFEVDPQNV LSGSSFQEEN INGVGDDPWF GIVSATHYNI FD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21209831110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12328ESLKRC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5890441e-63JX589044.1 Gossypium hirsutum clone NBRI_GE23653 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648089.11e-155PREDICTED: transcription factor MYB36-like
TrEMBLA0A0D2PK371e-134A0A0D2PK37_GOSRA; Uncharacterized protein
STRINGGorai.001G010000.11e-134(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2448134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.16e-39myb domain protein 84