PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10520_BGI-A2_v1.0
Common NameF383_03258
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 852aa    MW: 93639 Da    PI: 6.4166
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10520_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-182279457
                                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cotton_A_10520_BGI-A2_v1.0 22 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79
                                5789****************************************************97 PP
2START156.91.6e-491603672204
                                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEE CS
                       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlev 84 
                                 +aee+++e+++ka+ ++ +Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W ++++k e+   
  Cotton_A_10520_BGI-A2_v1.0 160 IAEETLAEFLSKATGTAVNWVQMPGMKPGPDSVGIFAISQSCSGMAARACGLVSLEPT-KIAEILKDRPSWFRDCRKLEVFTM 241
                                 7899******************************************************.7777777777*************9 PP

                                 ECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE CS
                       START  85 issg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh 161
                                    g  g+++l ++++ a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae+lpSg+li+p+++g+
  Cotton_A_10520_BGI-A2_v1.0 242 FPAGngGTIELVYTQMFAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGAGPSvasAAQFVRAEVLPSGYLIRPCEGGG 324
                                 999999********************************************998888889999********************* PP

                                 EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                       START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                 s +++v+h +l++++++++lr+l++s+ + ++k++  +l++ +
  Cotton_A_10520_BGI-A2_v1.0 325 SIIHIVDHLNLEAWSVPEVLRPLYESSGVIAQKMTIPALRYVR 367
                                 **********************************999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.241680IPR001356Homeobox domain
SMARTSM003892.0E-151884IPR001356Homeobox domain
CDDcd000864.88E-162181No hitNo description
SuperFamilySSF466893.21E-162183IPR009057Homeodomain-like
PfamPF000467.6E-162279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-182379IPR009057Homeodomain-like
CDDcd146861.81E-673112No hitNo description
PROSITE profilePS5084826.735150378IPR002913START domain
CDDcd088757.08E-70154370No hitNo description
Gene3DG3DSA:3.30.530.201.3E-18159342IPR023393START-like domain
SuperFamilySSF559611.06E-33159371No hitNo description
SMARTSM002347.9E-40159369IPR002913START domain
PfamPF018524.8E-47160368IPR002913START domain
PfamPF086704.7E-48707851IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MAMTHHHNRE SSIDKHLDTG KYVRYTAEQV EALERVYAEC PKPSSLRRQQ LIRECPILSN  60
IEPKQIKVWF QNRRCREKQR KEASRLQTVN RKLTAMNKLL MEENDRLQKQ VSQLVCENGY  120
MRQQLHTVNA SATDASCDSA VTTPQHSLRN ANNPAGLLSI AEETLAEFLS KATGTAVNWV  180
QMPGMKPGPD SVGIFAISQS CSGMAARACG LVSLEPTKIA EILKDRPSWF RDCRKLEVFT  240
MFPAGNGGTI ELVYTQMFAP TTLAPARDFW TLRYTTTLEN GSLVVCERSL SGSGAGPSVA  300
SAAQFVRAEV LPSGYLIRPC EGGGSIIHIV DHLNLEAWSV PEVLRPLYES SGVIAQKMTI  360
PALRYVRQIA QETSGEVVYS LGRQPAVLRT FSQRLSRGFN EAINGFNEDG WSIMNCDGTE  420
DVIIAINSGK SLSNSSNLTT GLSFLGGVLC AKASMLLQVI SKFSFPYYLC CYLCQNVPPA  480
VLVRFLREHR LEWADFNVDA YSAASLKAGT YAYPGMRPTS FTGSQIIMPL GQTVEHEELL  540
EVIRLEGQSL TQEDAFLSRD IHLLQICSGI DDNAVGACSE LVFAPIDEMF PDDAAFLPSG  600
FRIIPLESKP DSLATNRTLD LTSSLEVGPA TSQAAGDSPS QNARSVLTIA FQFPFDTNLQ  660
DNVATMARQY VRSVISSVQR VAMAISPCGS SPTIGPKPSP GSPEALTLAH WICQSYRHFH  720
LGEELLKSES LGGDSVLKNL WQHQDAILCC SLKSVPVFIF ANQAGLDMLE TTLVALQDIT  780
LDKIFDESGR KALCSDFTKL MQQGFTHLLA GVCMSTMGRH VSYEQAVAWK VLAADANTVH  840
CLAFSFINWS FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9664460.0AY966446.1 Gossypium barbadense class III HD-zip protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643014.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A1U8LSC40.0A0A1U8LSC4_GOSHI; homeobox-leucine zipper protein REVOLUTA-like
STRINGGorai.013G266900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]