PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10538_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 249aa    MW: 28898.5 Da    PI: 7.5018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10538_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-16956148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+ Ed  lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Cotton_A_10538_BGI-A2_v1.0  9 KGPWTEKEDMVLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 56
                                79********************************************97 PP
2Myb_DNA-binding56.75.4e-1862107148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg++T++E++l +++++++G++ W++Iar+++ gRt++++k++w++++
  Cotton_A_10538_BGI-A2_v1.0  62 RGKMTPQEEKLVLELHAKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 107
                                 89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.16456IPR017930Myb domain
SuperFamilySSF466897.49E-307103IPR009057Homeodomain-like
SMARTSM007179.7E-15858IPR001005SANT/Myb domain
PfamPF002492.8E-15956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-211063IPR009057Homeodomain-like
CDDcd001671.25E-101156No hitNo description
PROSITE profilePS5129425.56857111IPR017930Myb domain
SMARTSM007174.3E-1761109IPR001005SANT/Myb domain
PfamPF002491.2E-1662106IPR001005SANT/Myb domain
CDDcd001675.32E-1264107No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2464109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVKDESCRKG PWTEKEDMVL VNFVHLFGDR RWDFIAKVSG LNRTGKSCRL RWVNYLHPGL  60
KRGKMTPQEE KLVLELHAKW GNRWSRIARR LPGRTDNEIK NYWRTHMRKM ALEKKRSTSP  120
SSSSSSTVTR VDSLPSSGTG KVSFYDTGGP KMAVFDDVKG YSMDEIWKDI DMSEGNTTKL  180
PSSENYSEQG CCNHFSCPSM ASSPPWDFSW DYSLWKMDDD DEEEEEEEER KVFIATTNNQ  240
LFNLFVHKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-2791094103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165210.0JX616521.1 Gossypium hirsutum clone NBRI_GE61253 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645075.10.0PREDICTED: transcription factor MYB59-like
SwissprotQ9LX823e-90MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2P5Y5S11e-165A0A2P5Y5S1_GOSBA; Uncharacterized protein
STRINGGorai.013G265300.11e-164(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.18e-88myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]