PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10549_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 246aa    MW: 27041 Da    PI: 8.6051
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10549_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-201574357
                                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                +R+++tkeq+  Le+l+++  r+psa+++++++++l     ++ ++V++WFqN++a++++
  Cotton_A_10549_BGI-A2_v1.0 15 SRWNPTKEQISMLESLYKQgIRTPSADQIQQITSRLkaygTIEGKNVFYWFQNHKARQRQ 74
                                7*****************99**************************************97 PP
2Wus_type_Homeobox115.52.6e-371476365
           Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                ++RW+Pt+eQi +Le+lyk+G+rtP++++iq+it++L++yG ie+kNVfyWFQN+kaR+rqkq
  Cotton_A_10549_BGI-A2_v1.0 14 NSRWNPTKEQISMLESLYKQGIRTPSADQIQQITSRLKAYGTIEGKNVFYWFQNHKARQRQKQ 76
                                68***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-131081IPR009057Homeodomain-like
PROSITE profilePS5007110.8351075IPR001356Homeobox domain
SMARTSM003892.7E-61279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-81574IPR009057Homeodomain-like
PfamPF000464.8E-181574IPR001356Homeobox domain
CDDcd000863.40E-71676No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEGGGGGGGG GGGNSRWNPT KEQISMLESL YKQGIRTPSA DQIQQITSRL KAYGTIEGKN  60
VFYWFQNHKA RQRQKQKQEN LAYINRYIHH HHRAQPVFHP PPCTNVVCAG PYFVPQADHH  120
HHLGFYPQCP KVLLPSGSIK RRGRPIGKTG KSLFYNGNAY DHTMVPSPDT ENLYTGAFNN  180
GGGSTNHHET LPLFPLHPTG VSEETLMASS SPTGSTSCET TISAGGVDNH ESNNEGSGEH  240
RFIDFF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5837218e-74JX583721.1 Gossypium hirsutum clone NBRI_GE16841 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644576.10.0PREDICTED: WUSCHEL-related homeobox 2-like
TrEMBLA0A1U8N1C51e-179A0A1U8N1C5_GOSHI; WUSCHEL-related homeobox 2-like
STRINGGorai.013G264200.11e-163(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.13e-61WUSCHEL related homeobox 2