PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10567_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 137aa    MW: 15338.1 Da    PI: 9.5451
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10567_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS97.71.7e-301012498214
                        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                                   qaI+e v+++++vHiiD++i+ G+QW  L+qaL sR e p   l++T+v+    + k+ ++ tg+ L +fA++lg+pf+f+
  Cotton_A_10567_BGI-A2_v1.0  10 GIQAIVEHVSKAKKVHIIDLGIKTGVQWTVLMQALVSRYECPIeILKVTAVAT---NGKRLIKGTGKWLLSFAQSLGLPFSFK 89 
                                 569***********************************9766549********...579999********************* PP

                        GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrll 214
                                 v+v++++ dl+ + ++v+ gE++aV  +  l ++l
  Cotton_A_10567_BGI-A2_v1.0  90 VVVVSDMLDLKENLFEVDVGETVAVYAATTLRSML 124
                                 ****************************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.8231137IPR005202Transcription factor GRAS
PfamPF035145.9E-2810124IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MPWRNIPFVG IQAIVEHVSK AKKVHIIDLG IKTGVQWTVL MQALVSRYEC PIEILKVTAV  60
ATNGKRLIKG TGKWLLSFAQ SLGLPFSFKV VVVSDMLDLK ENLFEVDVGE TVAVYAATTL  120
RSMLVMPNQF RTYNEND
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022761269.16e-56DELLA protein RGL1-like
TrEMBLA0A0D2QH256e-71A0A0D2QH25_GOSRA; Uncharacterized protein
STRINGGorai.006G258800.11e-71(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-18GRAS family protein