PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10840_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 192aa    MW: 21740 Da    PI: 9.1158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10840_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-121460455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                 h  +Er+RR++i ++f  L  l+P +     kK +K ++L  A+eY+k+Lq
  Cotton_A_10840_BGI-A2_v1.0 14 EHVLAERKRREKISQSFLSLAALIPGL-----KKKDKNSVLGDAIEYLKQLQ 60
                                6899**********************9.....89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.6531059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-161472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-101460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.52E-111561No hitNo description
SuperFamilySSF474595.1E-151573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-121665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVGSLTRAPL LAQEHVLAER KRREKISQSF LSLAALIPGL KKKDKNSVLG DAIEYLKQLQ  60
ERKARLEEQV AKRTVESVKF VKKTTQFYAQ DDQTSSSDEN FGTQSKNPFP DIEARVSNKD  120
VLIRIHCETN KGCISNIINE VEKLHLSVLN SNALPFGQAT LYITIVAQME DEFSMTLRDL  180
VKTLREGLLN FM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823ERKRRE
21924RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5804131e-87JX580413.1 Gossypium hirsutum clone NBRI_GE12835 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016751185.11e-140PREDICTED: transcription factor bHLH18-like
SwissprotQ1PF168e-55BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A1U8PJ231e-138A0A1U8PJ23_GOSHI; transcription factor bHLH18-like
TrEMBLA0A2P5XX141e-137A0A2P5XX14_GOSBA; Uncharacterized protein
STRINGGorai.007G057800.11e-132(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]