PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_10871_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 303aa MW: 34346.9 Da PI: 6.5023

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_10871_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23.2	1.8e-07	94	115	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Cotton_A_10871_BGI-A2_v1.0 94 FCEICGKGFKRDANLRMHMRAH 115 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.32E-6	89	116	No hit	No description
PROSITE profile	PS50157	12.133	93	120	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0015	93	115	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	95	115	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.4E-6	95	118	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	51	140	173	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	230	178	199	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDSLQDFLSQ SVNTNTLISK DQMDHVSSEI VNAVHQTIIN GAALLSCAQI HYRNLAPVLN 60 PTPETKPEFE DYDGGESEVI ELDAVELLSE HLHFCEICGK GFKRDANLRM HMRAHGDQYK 120 TPEALAKKPE VKNTVRKTQF SCPYEGCNRN KKHKKFRPLK SVICVRNHFK RSHCPKMYCC 180 NRCHKKSFSV LADLKAHLKN CGVGEERKKW KCSCGNGFSR KDKLFGHISL FEGHMPAVAA 240 EEDQKLKGVV AMEEAEDEDE DELTEKESYL DDGFFNDLDL LDGFGSFENY SLQDVLGPSR 300 VVL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681063.1	0.0	PREDICTED: zinc finger protein STOP1 homolog
Swissprot	Q943I6	9e-71	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A1U8IXF8	0.0	A0A1U8IXF8_GOSHI; zinc finger protein STOP1 homolog
STRING	Gorai.007G060600.1	1e-175	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16077	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	2e-72	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]