PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11017_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 318aa    MW: 35793 Da    PI: 8.1156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11017_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-0578100123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 + C dC+ sFs+  +L +H+r+H
  Cotton_A_11017_BGI-A2_v1.0  78 FGCFDCDASFSSMKLLCQHMRLH 100
                                 56*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-52959No hitNo description
PROSITE profilePS5015711.9263259IPR007087Zinc finger, C2H2
SMARTSM003550.0333254IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
PfamPF139120.0373455IPR007087Zinc finger, C2H2
SMARTSM003550.1378100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01478105IPR007087Zinc finger, C2H2
SuperFamilySSF576679.0E-778100No hitNo description
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SuperFamilySSF576679.0E-7237264No hitNo description
PfamPF139121.9E-9241265IPR007087Zinc finger, C2H2
SMARTSM003550.97242264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619242269IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVPAGSSFLA FLGGKYLNTQ ETKTPPDSRN RFFCTYCCKG FKSNKALAGH LRIHSQHPPM  60
SKTEGKHFQE GDDDDSFFGC FDCDASFSSM KLLCQHMRLH RDTDSNGVHQ PAMPEESNSL  120
SEAATTFKQG TGSTVSPRDD HHNIDLLKDI NDNWSRTEKR GSKRTASEHD IVYDAEPFRV  180
YYGRMKTKET SMESELGAAD NESTVELSGN PVKTRDSPNK SKSRSCRGRR SVKKTKAVKS  240
VHRCEICDKT YETGQALGGH KSYHRVKDPL KQRKTEQQSC GEVKMVTGMV LPGLAPEEDD  300
KNPSKRMLDF DFNIPYEE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604242.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1U8PN280.0A0A1U8PN28_GOSHI; zinc finger protein ZAT1-like
STRINGGorai.009G075900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1835248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.15e-06C2H2 family protein