PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11041_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 292aa    MW: 33001.3 Da    PI: 8.707
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11041_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000573254123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                + C +Cgk F +k  +  H+r H
  Cotton_A_11041_BGI-A2_v1.0 32 FFCRYCGKGFMSKRAMAGHLRIH 54
                                67*******************98 PP
2zf-C2H213.10.0002882104123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C  C++sFs+  +L +H + H
  Cotton_A_11041_BGI-A2_v1.0  82 FSCLVCTESFSSMKLLCQHTNIH 104
                                 89******************997 PP
3zf-C2H212.80.00037217237121
                                 EEETTTTEEESSHHHHHHHHH CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                                 ++C++Cgk+F +   L  H  
  Cotton_A_11041_BGI-A2_v1.0 217 HQCEICGKTFETGQALGGHKT 237
                                 79********99888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-53059No hitNo description
PROSITE profilePS5015712.6323259IPR007087Zinc finger, C2H2
SMARTSM003550.00423254IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803456IPR007087Zinc finger, C2H2
SuperFamilySSF576674.98E-781104No hitNo description
PROSITE profilePS501578.99582109IPR007087Zinc finger, C2H2
SMARTSM003550.9282104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084106IPR007087Zinc finger, C2H2
SuperFamilySSF576674.98E-7212239No hitNo description
PROSITE profilePS5015710.637217244IPR007087Zinc finger, C2H2
PfamPF139122.2E-9217240IPR007087Zinc finger, C2H2
SMARTSM003550.1217239IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVPADSCSLP FLGGKYLKTQ DAGTPHDSRN SFFCRYCGKG FMSKRAMAGH LRIHSHHHPT  60
SKTELQQQQQ DVDDDDDDDD FFSCLVCTES FSSMKLLCQH TNIHRHMDSS QESNVISSGV  120
DTVVKQGNGP HTIDSLKDFN FKWSRTGKRG SNRIPSQDAQ PLKLRVTPPH METRKNKKMK  180
TEDTSMEFEL GGTKSASGVD PCHARRSRKN KAVKSEHQCE ICGKTFETGQ ALGGHKTYHR  240
VKKNKVELLQ QGKTKQEPCM MTPMLLPHLS QQPDLSHPKT MLDFDLNIPY QQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3949241e-116GQ394924.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1947 SSR marker DPL0266 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604245.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0D2RW780.0A0A0D2RW78_GOSRA; Uncharacterized protein
STRINGGorai.009G078100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1835248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.14e-07C2H2 family protein