PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11111_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 348aa    MW: 39939.2 Da    PI: 9.4579
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11111_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.4e-104389153
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                                s++kGV + k +g+W A+++    n  ++r++lg+f t+ +Aa a++ a  k+
  Cotton_A_11111_BGI-A2_v1.0 43 SQFKGVMRQK-NGKWGAQLYS---N--HTRIWLGTFKTEIDAAVAYDSATIKF 89
                                789***8666.9******666...3..5**********99*******997665 PP
2B379.53.3e-25166263184
                                 EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                                 f+k+ltpsdv+k++rlv+pk++a ++                +k+++++l+++d+  r W+++++yr++s+++v+t+GW++F 
  Cotton_A_11111_BGI-A2_v1.0 166 FQKKLTPSDVGKLNRLVIPKRYAVKYfqsifwtekenadvTDSKTNDVELVFYDKFMRIWKFRYCYRNSSQSFVFTRGWNRFL 248
                                 99*******************************99999996677899************************************ PP

                                 HHHT--TT-EEEEEE CS
                          B3  70 kangLkegDfvvFkl 84 
                                 k+++Lk++D+v F +
  Cotton_A_11111_BGI-A2_v1.0 249 KEKKLKANDVVSFFV 263
                                 ************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-1543101IPR016177DNA-binding domain
CDDcd000186.57E-2143101No hitNo description
PfamPF008471.2E-54488IPR001471AP2/ERF domain
PROSITE profilePS5103217.1874499IPR001471AP2/ERF domain
SMARTSM003802.5E-1744105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-164499IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.6E-28162272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-24165267IPR015300DNA-binding pseudobarrel domain
CDDcd100177.46E-21165261No hitNo description
PfamPF023624.3E-22166263IPR003340B3 DNA binding domain
SMARTSM010193.6E-17166279IPR003340B3 DNA binding domain
PROSITE profilePS5086311.787166281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEEILSVIS SGGGNTNSDV SNSISTTHQA NKRQRCGDKG NSSQFKGVMR QKNGKWGAQL  60
YSNHTRIWLG TFKTEIDAAV AYDSATIKFR PGDTHRNFPW NEITIEEPKF LSRYSAEAVL  120
SMIRDGSYQY KFMDFIKACS RSTKPNTAIN SVGTYSNEGL ICKQLFQKKL TPSDVGKLNR  180
LVIPKRYAVK YFQSIFWTEK ENADVTDSKT NDVELVFYDK FMRIWKFRYC YRNSSQSFVF  240
TRGWNRFLKE KKLKANDVVS FFVCECRKEN EVQRFCMIDA IKSDNGGTFV AVNNIHVGIE  300
VDLQLRLGHY YPIGDEKHVQ EEQGSMAAAK PKQDDKTEGF KLFGMQIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-2516226110100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147521e-102JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609446.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-90RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A1U8J2870.0A0A1U8J287_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g50680-like
STRINGGorai.009G020200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15647617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.15e-93RAV family protein