PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11112_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 193aa    MW: 22100.7 Da    PI: 9.4562
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11112_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.87.4e-104390154
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                                s+ykGV + k +g+W A+++       + +r++lg+f ++ +Aa a+  a+ +++
  Cotton_A_11112_BGI-A2_v1.0 43 SQYKGVMRQK-NGQWGAQLYA------NhTRIWLGTFKSEIDAAMAYNSAAAAIK 90
                                78****8676.8******887......34**********99******99998765 PP
2B351.12.4e-16116193164
                                 EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkG 64 
                                 f k+ltpsdv+k++rlv+pkk+a ++              g  k+++++l+++d+  r W+++++y+++s+++v+t+G
  Cotton_A_11112_BGI-A2_v1.0 116 FSKELTPSDVGKLNRLVIPKKYAVKYfspvfgsenenadvGDRKTNDVELVFYDKFTRIWKFRYCYWNSSQSFVFTRG 193
                                 889******************************999999988899*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-54389IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1343103IPR016177DNA-binding domain
PROSITE profilePS5103215.6244101IPR001471AP2/ERF domain
SMARTSM003806.2E-1344107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-1444101IPR001471AP2/ERF domain
SuperFamilySSF1019364.05E-15114193IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-18115193IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-13115193No hitNo description
PfamPF023623.0E-13116193IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEEEITSLIL SGEANTHSDV SDSTSTTHQA NKRQRCGGKG NSSQYKGVMR QKNGQWGAQL  60
YANHTRIWLG TFKSEIDAAM AYNSAAAAIK FRTGDTYRNF PWNEITIEEP KFLSHFSKEL  120
TPSDVGKLNR LVIPKKYAVK YFSPVFGSEN ENADVGDRKT NDVELVFYDK FTRIWKFRYC  180
YWNSSQSFVF TRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-161161931482DNA-binding protein RAV1
5os9_A2e-16116193875B3 domain-containing transcription factor NGA1
5os9_B2e-16116193875B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147528e-55JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441778.11e-126PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P57e-39RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0D2THR61e-124A0A0D2THR6_GOSRA; Uncharacterized protein
STRINGGorai.009G020300.11e-125(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-29RAV family protein