PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11245_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 235aa    MW: 25502.9 Da    PI: 7.8053
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11245_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1819.9e-5725120297
                       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                                 +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk
  Cotton_A_11245_BGI-A2_v1.0  25 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLK 107
                                 89********************************************************************************* PP

                       NF-YB  85 vylkkyrelegek 97 
                                 vyl+kyre+egek
  Cotton_A_11245_BGI-A2_v1.0 108 VYLNKYRETEGEK 120
                                 ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-5421132IPR009072Histone-fold
SuperFamilySSF471132.84E-4127134IPR009072Histone-fold
PfamPF008082.2E-273094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.6E-205876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.6E-207795No hitNo description
PRINTSPR006159.6E-2096114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTGKRNQTSP VGSPSSGNIS DSSSKEQDRF LPIANVSRIM KKSLPANAKI SKEAKETVQE  60
CVSEFISFIT GEASDKCQRE KRKTINGDDL LWAMTTLGFE NYVGPLKVYL NKYRETEGEK  120
NSMARQEDHH HHHQSPTSYG LISHGGANEF NNVNAGISSS ANTADHFQGY NSGGGGFFSL  180
GSHPQSYGDH GRRGIGGYGE NLMAAAGGFN TSRIGENGDG NGNRTMAAHF HRVDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-4925115292Transcription factor HapC (Eurofung)
4g92_B9e-4925115292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3935971e-124GQ393597.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0562 SSR marker CGR5603 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622853.11e-176PREDICTED: nuclear transcription factor Y subunit B-like
TrEMBLA0A1U8NW201e-157A0A1U8NW20_GOSHI; nuclear transcription factor Y subunit B-like
STRINGGorai.003G046600.11e-137(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2056356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-64nuclear factor Y, subunit B3