PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11283_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 277aa    MW: 30536.7 Da    PI: 7.7671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11283_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.5e-1278124354
                                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 ++h+e+ErrRR+riN  +++Lr+llP +     +K++Ka+ L ++++ +k+L
  Cotton_A_11283_BGI-A2_v1.0  78 KNHSEAERRRRERINAHLDTLRTLLPCR-----QKMDKATLLGEVIKQLKEL 124
                                 58*************************9.....8************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.86675124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-1078124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-478126No hitNo description
Gene3DG3DSA:4.10.280.102.7E-1279127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1379130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1081130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00207165201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAAYSFNNNF SSGNCYSGIF DPFSRDLGLC NESSHGGSLS VPVPQSLVLD HEKGELVKAP  60
VELKKKSVSE EKIIAALKNH SEAERRRRER INAHLDTLRT LLPCRQKMDK ATLLGEVIKQ  120
LKELKKNATE ASKGLLVPMD DDDEVRVEPC NVNEADGTFS FKALICCDYR PQLLTDLGQA  180
LDALPLPITI VKSEISTLGS RLKTDFIFTA SYRSTSSVAN VGNDDDGTDA RRFLACSIRK  240
ALNSVVEKAS ISPEHSPLLT FPNKRRRISY IDTSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388ERRRRE
2263267KRRRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603224.10.0PREDICTED: putative transcription factor bHLH107
TrEMBLA0A1U8JFK30.0A0A1U8JFK3_GOSHI; putative transcription factor bHLH107
TrEMBLA0A2P5X6T20.0A0A2P5X6T2_GOSBA; Uncharacterized protein
STRINGGorai.009G163400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155811017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-24bHLH family protein