PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11308_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 377aa    MW: 41467.2 Da    PI: 7.7256
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11308_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.4e-1853113257
                                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                 ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  Cotton_A_11308_BGI-A2_v1.0  53 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 113
                                 89*****************99*************************************995 PP
2Wus_type_Homeobox112.22.7e-3652114264
           Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k
  Cotton_A_11308_BGI-A2_v1.0  52 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114
                                 689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-739112IPR009057Homeodomain-like
SuperFamilySSF466894.71E-1248116IPR009057Homeodomain-like
PROSITE profilePS5007110.51149114IPR001356Homeobox domain
SMARTSM003891.2E-851118IPR001356Homeobox domain
CDDcd000869.32E-952114No hitNo description
PfamPF000462.0E-1553113IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSSSNRHWPS MFKSKPCNTH HQWQHDINPS LMSGACQKAP YTSGCEERSP EPKPRWNPKP  60
EQIRILEAIF NSGMVNPPRD EIRKIRAQLQ EYGQVGDANV FYWFQNRKSR SKHKLRNLQN  120
SKQQLQQNQQ APPITNISTI SAPSSSSSSS EKSSPKGANK STFSLSSTNV VDVSSSPTAS  180
VNQTYFHQPQ NEFLNEPFFF PMQQPAGGSG FTQAFGFSEL TNVIQVPEQT VGPCTSLLLS  240
EILTHGASRK GEEKMDMQLQ LSYSTMTTAP STNPIAPHTD STSATVTVPS NTHHIHGVGE  300
PAAVGHGDLG RSTVFINDVA FEVTVGPFNV REAFGDDAIL INSSGQPVLT NEWGLTLQSL  360
QHGGFYYLVR SLSPFSI
Functional Description ? help Back to Top
Source Description
UniProtHomeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5875412e-63JX587541.1 Gossypium hirsutum clone NBRI_GE21673 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605724.10.0PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
RefseqXP_017605725.10.0PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
SwissprotQ6X7J49e-90WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBLA0A1U8MVD70.0A0A1U8MVD7_GOSHI; WUSCHEL-related homeobox 9-like
STRINGGorai.009G165700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72062640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.14e-72WUSCHEL related homeobox 8
Publications ? help Back to Top
  1. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  4. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  5. Blein T,Pautot V,Laufs P
    Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection.
    Plants (Basel), 2013. 2(2): p. 230-47
    [PMID:27137374]