PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11337_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 320aa MW: 34739.1 Da PI: 9.6756

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11337_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.2	7.7e-38	35	93	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k++ Cotton_A_11337_BGI-A2_v1.0 35 HPPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRT 93 56789**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-25	29	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-32	38	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MQQDRGGRGS EQGMKQNQQQ DQRLKPLTGE NQQQHPPQKC PRCESLNTKF CYYNNYSLSQ 60 PRYFCKTCRR YWTQGGTLRN VPVGGGCRKG KRTKVSSSGE NSRSQPLISQ QQAAQQHSLT 120 SPQSMISSNP MISVSAAFRT KESGSLASSS AIPSVGSYYP SAGFMSSLAA IQSMNQPQPF 180 NQPLNQALSM GGDLGGSSNL GLLQGYGVPS FGSQQHQPNQ QTQFFPMGDR DQKTVNMYPS 240 DQERLIQSSR LAAGNSSQQN WHQSFINNSD PTASEAALWS MNNNSSSSTS SAGNTNTSNT 300 TAASLNPNQW PDLPGYGAPP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603994.1	0.0	PREDICTED: dof zinc finger protein DOF1.8-like
Refseq	XP_017603995.1	0.0	PREDICTED: dof zinc finger protein DOF1.8-like
Refseq	XP_017603996.1	0.0	PREDICTED: dof zinc finger protein DOF1.8-like
TrEMBL	A0A1U8KBV6	0.0	A0A1U8KBV6_GOSHI; dof zinc finger protein DOF1.2-like
STRING	Gorai.009G168400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15986	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-33	OBF binding protein 4