PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11338_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 432aa    MW: 48873.9 Da    PI: 5.8368
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11338_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18203300398
                                 EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                          B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 
                                 k+l++sdv+++gr+vlpk+ ae +   +  +e+++++l+d  s +sW +k+++  ++ks++yvl+ ++ +Fvk+ngL  gDf+
  Cotton_A_11338_BGI-A2_v1.0 203 KELKNSDVGSLGRIVLPKREAELNlpTLCDKEGIQVVLKDvYSHQSWPLKYKFwsNNKSRMYVLE-NTADFVKQNGLGIGDFL 284
                                 899******************99999444457899*****7777*******99888888889999.***************** PP

                                 EEEE-SSSEE..EEEEE- CS
                          B3  81 vFkldgrsefelvvkvfr 98 
                                 +++  ++++++l+++v++
  Cotton_A_11338_BGI-A2_v1.0 285 TLY--EDEGKNLYFSVIK 300
                                 ***..6699999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-23198303IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-22200300No hitNo description
SMARTSM010191.8E-19201302IPR003340B3 DNA binding domain
PROSITE profilePS5086310.334201302IPR003340B3 DNA binding domain
SuperFamilySSF1019363.66E-20201299IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-15203300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MENSYMPFLP TTSTATNTIL RQPNMGCSQN SELSIYEPMN SKNFSSKPIT TAPNSQFHHP  60
TQFMAPYQSL QLPYRHPIEQ TDHSLAYPFF LGQNGIEFGS IIASNGVQHG SCFMQRDGVS  120
KAEERRMLDP YGSKAARIKR KLARQRSLSL QRNASSGATA LVDKRRLNSS GADNDVNINN  180
DTKRDLYMFC TPDNKRLRVL LRKELKNSDV GSLGRIVLPK REAELNLPTL CDKEGIQVVL  240
KDVYSHQSWP LKYKFWSNNK SRMYVLENTA DFVKQNGLGI GDFLTLYEDE GKNLYFSVIK  300
VERVAAAEPS NNQPYDSQNN YMDMPFTGPL RDEEETCLEL LIEQLKHTEH EESNDLMTLA  360
MDATYSHGPP AADQSQHFVS DANVELTATE LQTSSTSLRG KARSVDEIQI NFDDCYSGLD  420
MLPDVNLYNF LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-541912983110B3 domain-containing transcription factor LEC2
6j9c_D3e-541912983110B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017607697.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
TrEMBLA0A1U8K6N00.0A0A1U8K6N0_GOSHI; B3 domain-containing transcription factor LEC2-like
STRINGGorai.009G168500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-61B3 family protein