PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11370_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 316aa MW: 35424.3 Da PI: 6.7702

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11370_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	68	128	3	57
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+t+t++q+++L++l+++ r ps++++++++++l +++ ++V++WFqN++a+e++ Cotton_A_11370_BGI-A2_v1.0 68 ARWTPTTDQIRILKDLYNNngVRSPSTDQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 128 7***************8678***********************************97 PP
2	Wus_type_Homeobox	113.4	1.1e-36	66	130	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RWtPt++Qi+iL++ly+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Cotton_A_11370_BGI-A2_v1.0 66 SSARWTPTTDQIRILKDLYNnNGVRSPSTDQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 130 689**************989***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-11	54	130	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.333	63	129	IPR001356	Homeobox domain
SMART	SM00389	1.7E-5	65	133	IPR001356	Homeobox domain
Pfam	PF00046	7.9E-17	68	128	IPR001356	Homeobox domain
CDD	cd00086	1.14E-7	69	130	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-7	69	128	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSYNFTYIPS LQFPSLSIQL GYLCLLLFVF FLLSLHMEPQ QQQNQQAPNE DCGGGSGKGS 60 FLCRQSSARW TPTTDQIRIL KDLYNNNGVR SPSTDQIQRI SARLRQYGKI EGKNVFYWFQ 120 NHKARERQKK RFTTTTNHQV PMQSPTTAAN NKYPNISPGY SPTSLSSTGA LTVGQIGNYG 180 YGSITMEKSF RLSADCSISA CGGSTSVGES LSHNFGWVGF DPTYSSSYTF FEHKKFMEER 240 QKDEDDAEEE AAAPQIETLP LFPMHSEDDN GFCSNIKPRL DSCYSGWYKS EDGYTGSRAS 300 LELSLNPYAG RSQDSI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017635843.1	0.0	PREDICTED: protein WUSCHEL
Swissprot	Q8LL11	2e-81	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A0D2T1D4	0.0	A0A0D2T1D4_GOSRA; Uncharacterized protein
STRING	Gorai.008G063200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5244	28	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	3e-46	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]