PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11417_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GeBP
Protein Properties Length: 177aa    MW: 19928.7 Da    PI: 9.2713
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11417_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57338.43.5e-122534697
                      DUF573 46 sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
                                s  ++ksql+eK+rrL+kKf   +++ ++g +ps  + hd+  f+lsk++W 
  Cotton_A_11417_BGI-A2_v1.0  2 SQPYTKSQLSEKLRRLRKKFGVVSSRLARGLNPSSLSLHDRALFDLSKRLWS 53
                                67899**********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.6E-13253IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSQPYTKSQL SEKLRRLRKK FGVVSSRLAR GLNPSSLSLH DRALFDLSKR LWSPEFASSS  60
PFGKNSSGFN GVAGNGFDDC DTIDDDGEVK INGVSLHYDF AAGRDEVTSR ETIDGVLAKG  120
VLNAFDECLK EVRMMFMKPG VVCMDTTERK WKEQRVSEFD VLGRRLRLVI ENSLTRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5780581e-160JX578058.1 Gossypium hirsutum clone NBRI_GE9999 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634569.11e-128PREDICTED: uncharacterized protein LOC108476763
TrEMBLA0A1U8KLI51e-125A0A1U8KLI5_GOSHI; sorbin and SH3 domain-containing protein 2-like
STRINGGorai.008G058900.11e-110(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1804289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.16e-08DNA-binding storekeeper protein-related transcriptional regulator