PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11430_BGI-A2_v1.0

Common Name

F383_23720

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YC

Protein Properties

Length: 208aa MW: 24345 Da PI: 6.4351

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11430_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	136.8	6.2e-43	65	165	2	98
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdia 80 l+ fw +q i + + fk +h+lPlarik+i+k+d+dvkmisa++P+l+skacelfileltlr+wlh+ee kr tl+++d++ Cotton_A_11430_BGI-A2_v1.0 65 LELFWYQQmleIHNISAFKsHHQLPLARIKRIMKSDKDVKMISADTPILFSKACELFILELTLRAWLHTEEDKRGTLQRCDVS 147 789**966667778899889********************************************************* PP NF-YC 81 aavtrtdifdflvdivpr 98 +a+ + + fl d+vp Cotton_A_11430_BGI-A2_v1.0 148 KAIRQEEALHFLFDVVPL 165 **************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.53E-26	68	160	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.6E-32	83	151	IPR009072	Histone-fold
Pfam	PF00808	1.7E-18	87	150	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MNRPTLERLT MDLNQSMEFT PSATSSPQIH NFMPMTSFML PFHQPSNEDG EEVKQSHLLV 60 QKRSLELFWY QQMLEIHNIS AFKSHHQLPL ARIKRIMKSD KDVKMISADT PILFSKACEL 120 FILELTLRAW LHTEEDKRGT LQRCDVSKAI RQEEALHFLF DVVPLINHKD DDGKFLEENE 180 HHSVNQPQFP LLDMNAELVI KLQKLNNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	8e-33	72	164	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636742.1	1e-151	PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1
TrEMBL	A0A0B0MK63	1e-148	A0A0B0MK63_GOSAR; Nuclear transcription factor Y subunit C-2-like protein
STRING	Gorai.008G057500.1	1e-130	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18090	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-40	nuclear factor Y, subunit C2