PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11431_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 68aa    MW: 7901.08 Da    PI: 7.8466
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11431_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.81e-14327226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                ktelC+++ + G C+yG+ C+FaHg
  Cotton_A_11431_BGI-A2_v1.0  3 KTELCDTWEEIGSCPYGEHCQFAHG 27
                                8***********************8 PP
2zf-CCCH23.41e-074065126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                ykt  Cr  +++ +C+yG rC+F H+
  Cotton_A_11431_BGI-A2_v1.0 40 YKTQACRMVLAGQICPYGHRCHFRHS 65
                                9**********99**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.2E-6128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.643129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10233IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-11327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-17334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-123568IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-93667IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-53966IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2913967IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-54065IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MAKTELCDTW EEIGSCPYGE HCQFAHGITE LRPVIRHPRY KTQACRMVLA GQICPYGHRC  60
HFRHSLTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22368570Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636931.12e-46PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9F54e-40C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A1U8LG685e-45A0A1U8LG68_GOSHI; zinc finger CCCH domain-containing protein 14
TrEMBLA0A2P5XXS44e-45A0A2P5XXS4_GOSBA; Uncharacterized protein
STRINGGorai.008G057400.11e-44(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-42C3H family protein